Update slurm-jupyter.patch

slurm-jupyter.patch

+diff -Naur '--exclude=*cache*' anaconda3/lib/python3.8/site-packages/slurm_jupyter/__init__.py anaconda3.new/lib/python3.8/site-packages/slurm_jupyter/__init__.py
+--- anaconda3/lib/python3.8/site-packages/slurm_jupyter/__init__.py	2021-02-15 08:37:38.000000000 +0100
++++ anaconda3.new/lib/python3.8/site-packages/slurm_jupyter/__init__.py	2021-05-24 19:30:43.382213781 +0200
+@@ -131,7 +131,7 @@
+         str: Slurm job id.
+     """
+ 
+-    cmd = 'ssh {user}@{frontend} cat - > {tmp_dir}/{tmp_script} ; mkdir -p {tmp_dir} ; sbatch {tmp_dir}/{tmp_script} '.format(**spec)
++    cmd = 'ssh {user}@{frontend} mkdir -p {tmp_dir} ; cat - > {tmp_dir}/{tmp_script} ; sbatch {tmp_dir}/{tmp_script} '.format(**spec)
+         
+     if verbose: print("script ssh transfer:", cmd, sep='\n')
+ 
+@@ -336,7 +336,7 @@
+     Returns:
+         (subprocess.Popen, threading.Thread, Queue.Queue): Process, Thread and Queue.
+     """
+-    cmd = 'ssh -L{port}:{node}.genomedk.net:{hostport} {user}@{frontend}'.format(**spec)
++    cmd = 'ssh -L{port}:{node}:{hostport} {user}@{frontend}'.format(**spec)
+     if verbose: print("forwarding port:", cmd)
+     port_p = Popen(cmd, shell=True, stdin=PIPE, stdout=PIPE, stderr=PIPE)
+     # we have to set stdin=PIPE even though we eodn't use it because this
+@@ -385,8 +385,7 @@
+     """
+     script = mem_script.format(**spec)
+ 
+-    # cmd = 'ssh {user}@{frontend} cat - > {tmp_dir}/{mem_script} ; mkdir -p {tmp_dir}'.format(**spec)
+-    cmd = 'ssh {user}@{frontend} cat - > {tmp_dir}/{mem_script} ; mkdir -p {tmp_dir}'.format(**spec)
++    cmd = 'ssh {user}@{frontend} mkdir -p {tmp_dir} ; cat - > {tmp_dir}/{mem_script}'.format(**spec)
+         
+     if verbose: print("memory script:", script, sep='\n')
+